5/26/2023 0 Comments Jump paint downloadIf you'd like to just browse the data, it's a lot easier to do so using a storage browser. Note also that many datasets contain separate batches and you may want a subset of available batches. Note that for each dataset you can download just images, just extracted features and metadata, or both. See Folder Structure for a complete description of data organization in Cell Painting gallery. Original images re-profiled in 2023Ĩ.3 million single cells from 232 plates, across 488 treatments from 5 public datasets, used for learning representations Dataset nameģ00+ compounds and 160+ genes (CRISPR knockout and overexpression) profiled in A549 and U2OS cells, at two timepointsģ00+ compounds profiled in U2OS cells using several different modifications of the Cell Painting protocolģ00+ compounds profiled in U2OS using different microscopes and settingsĢ8,000+ genes and compounds profiled in Cell Painting and L1000 gene expressionġ,571 compounds across 6 doses in A549 cellsĢ,200+ compounds and 200+ genes profiles in U2OS cellsġ16,000+ compounds and 16+ genes (CRISPR knockout and overexpression) profiled in U2OS cellsģ23 genes overexpressed in U2OS cells. the accession number of the first dataset is cpg0000. The datasets' accession numbers are the first seven characters of the dataset name.Į.g. the first dataset is located at s3://cellpainting-gallery/cpg0000-jump-pilot and can be listed using aws s3 ls -no-sign-request s3://cellpainting-gallery/cpg0000-jump-pilot/ (note the / at the end). The datasets are stored with the prefix indicated by the dataset name.Į.g. Several updates to that protocol exist ( Cell Painting wiki). Available datasetsĪll datasets are generated using the Cell Painting assay unless indicated otherwise. We used the dataset cpg0000 ( Chandrasekaran et al., 2022), available from the Cell Painting Gallery on the Registry of Open Data on AWS ( ). Still, professional ethics require that you cite the appropriate resources/publications, listed below, when using individual datasets. This page provides a guide to the datasets that are available in the Cell Painting Gallery, hosted by the AWS Registry of Open Data (RODA): Citation/licenseĪll the data is released with CC0 1.0 Universal (CC0 1.0).
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